You can edit the list of codon frequency tables used by CLC Genomics Workbench.
Note! Please be aware that this process needs to be handled carefully, otherwise you may have to re-install the Workbench to get it to work.
In the Workbench installation folder under
res, there is a folder named
codonfreq. This folder contains all the codon frequency tables organized into subfolders in a hierarchy. In order to change the tables, you simply add, delete or rename folders and the files in the folders. If you wish to add new tables, please use the existing ones as template. In existing tables, the "_number" at the end of the ".cftbl" file name is the number of CDSs that were used for calculation, according to the http://www.kazusa.or.jp/codon/ site.
Restart the Workbench to have the changes take effect.
Please note that when updating the Workbench to a new version, this information is not preserved. This means that you should keep this information in a separate place as back-up. (The ability to change the tables is mainly aimed at centrally deployed installations of the Workbench).