Microarray analysis
This section focuses on analysing expression data from sources such as microarrays using tools found under the Microarray Analysis (
) folder of the Toolbox. This includes tools for performing quality control of the data, transformation and normalization, statistical analysis to measure differential expression and annotation-based tests. A number of visualization tools such as volcano plots, MA plots, scatter plots, box plots, and heat maps are also available to aid interpretation of the results.
Tools for analysing RNA-Seq and small RNA data are available under the RNA-Seq and Small RNA Analysis (
) folder of the Toolbox and are described in RNA-Seq analysis and miRNA analysis.
Subsections
- Experimental design
- Transformation and normalization
- Quality control
- Feature clustering
- Statistical analysis - identifying differential expression
- Annotation tests
- General plots