Options for clc_unpaired_reads
usage: clc_unpaired_reads <options> Make a file with the reads from a read mapping that was mapped as pairs, but did not live up to the requirements to form a pair (wrong orientations, wrong distances, different reference sequences, or one of the two reads from the pair not mapped). Options: -h / --help: Display this message. -a <file> / --cas <file>: Specify the input cas file (required). -o <file> / --output <file>: Specify the output fasta or fastq file (required).