Options for clc_unpaired_reads

usage: clc_unpaired_reads <options>
  Make a file with the reads from a read mapping that was mapped as pairs, but did
  not live up to the requirements to form a pair (wrong orientations, wrong
  distances, different reference sequences, or one of the two reads from the pair
  not mapped).
  -h / --help: Display this message.
  -a <file> / --cas <file>: Specify the input cas file (required).
  -o <file> / --output <file>: Specify the output fasta or fastq file