De novo assembly outputs
The output of the
clc_assembler is a fasta file containing all the contig sequences.
This means that there is no information about where the reads are placed, how they align, coverage levels etc. If this information is desired, you can use the clc_mapper or clc_mapper_legacy program and use the newly created contig sequences as references. The cas format file created using the mapping program will contain this sort of information.