Options for clc_filter_matches
usage: clc_filter_matches <options> Remove matches from a read mapping if they do not live up to some given criteria. Options: -h / --help: Display this message. -a <file> / --cas <file>: Set the input cas file (required). -o <file> / --output <file>: Set the output cas file (required). -l <n> / --lengthfraction <n>: Set the fraction of the read that must match. A real number between 0.0 and 1.0 (required). -s <n> / --similarity <n>: Set the limit for the similarity in the fraction of the read that must match (according to "-l" option). A real number between 0.0 and 1.0 (required).