De novo assembly inputs

Any number of read files can be input to a de novo assembly. These includes files containing paired reads and files containing single reads. Different types of read data can be input to a single de novo assembly. Below is a table of the accepted formats for data input.

Format option  
Fasta + +
Fastq + -
Scarf + -
csfasta + -
Sff * + -
GenBank - +

* Please note that paired 454 data needs to be pre-processed using the clc_split_reads program