De novo assembly inputs
Any number of read files can be input to a de novo assembly. These includes files containing paired reads and files containing single reads. Different types of read data can be input to a single de novo assembly. Below is a table of the accepted formats for data input.
| Format | option | |
| Fasta | + | + |
| Fastq | + | - |
| Scarf | + | - |
| csfasta | + | - |
| Sff * | + | - |
| GenBank | - | + |
* Please note that paired 454 data needs to be pre-processed using the clc_split_reads program