Resistance abundance table

The Resistance abundance table summarizes the abundance of each marker, i.e., it reports the number of times a given marker is found in the input reads. The abundance is also reported in units of RPKM, referred to as the normalized abundance, which are calculated in the same way as is done by ShortBRED-Quantify. It is possible to aggregate the abundance by gene name and resistance phenotype to get the abundance at each of these levels. The table can be visualized using the Stacked bar charts and Stacked area charts function, as well as the Sunburst charts.