The Merge and Estimate Alpha and Beta diversities workflow requires several abundance tables as input file. The first tool of the workflow is the Merge Abundance Tables. The output is a single merged abundance table that will be used as input for two additional tools, the Alpha diversity tool and the Beta diversity tool. Running this workflow will therefore give three outputs: a diversity report for the alpha diversity, a PCoA for the beta diversity and a merged abundance table.
To run the tool, go to: Metagenomics () | Taxonomic Analysis () | Workflows | Merge and Estimate Alpha and Beta diversities.
In the first step, select several abundance tables (figure 6.21).
The Merge and Estimate Alpha and Beta Diversities workflow generates the results seen in figure 6.22.