Non-exclusive Algorithms
Below is a list of algorithms which are non-exclusive, meaning that multiple jobs of these types can be run concurrently on a given node, be that a single server, job or grid node.
Algorithms marked as Streaming are I/O intensive and two streaming algorithms will not be run at the same time. When running on grid, Streaming algorithms are treated as exclusive, meaning that they will never run in conjunction with other algorithms (or themselves).
| Algorithm | Streaming | |
| Add attB Sites | ||
| Amino Acid Changes | X | |
| Annotate from Known Variants | X | |
| Annotate with Conservation Scores | X | |
| Annotate with Exon Numbers | X | |
| Annotate with Flanking Sequences | X | |
| Annotate with Nearby Gene Information | ||
| Annotate with Overlap Information | X | |
| Annotate with Repeat and Homopolymer Information | ||
| Apply Peak Shape Filter | ||
| Assemble Sequences | ||
| Assemble Sequences to Reference | ||
| BLAST at NCBI | ||
| Call Methylation Levels | ||
| ChIP-Seq Analysis | ||
| Convert DNA To RNA | X | |
| Convert from Tracks | X | |
| Convert RNA to DNA | X | |
| Convert to Tracks | X | |
| Copy Number Variant Detection (CNVs) | ||
| Count-based statistical analysis | ||
| Create Alignment | ||
| Create BLAST Database | ||
| Create Box Plot | ||
| Create Entry Clone (BP) | ||
| Create Expression Browser | ||
| Create Expression Clone (LR) | ||
| Create GC Content Graph Track | ||
| Create Histogram | ||
| Create K-medoids Clustering for RNA-Seq | ||
| Create MA Plot | ||
| Create Mapping Graph Track | ||
| Create RRBS-fragment Track | ||
| Create Sample Report | ||
| Create Sequence Statistics | ||
| Create Track from Experiment | ||
| Create Track List | ||
| Create Tree | ||
| Create Venn Diagram for RNA-Seq | ||
| Demultiplex Reads | ||
| Download 3D Protein Structure Database | X | |
| Download BLAST Databases | X | |
| Download Pfam Database | X | |
| Extract Annotations | ||
| Extract Consensus Sequence | ||
| Extract IsomiR Counts | ||
| Extract Reads | ||
| Extract Sequences | X | |
| Fasta High-Throughput Sequencing Import | X | |
| Filter against Known Variants | X | |
| Filter Annotations on Name | X | |
| Filter Based on Overlap | X | |
| Find and Model Structure | X | |
| Find Binding Sites and Create Fragments | ||
| Find Open Reading Frames | ||
| Gaussian Statistical Analysis | ||
| Gene Set Test | ||
| GO Enrichment Analysis | ||
| Hierarchical Clustering of Samples | ||
| Identify Enriched Variants in Case vs Control Samples | X | |
| Identify Graph Threshold Areas | ||
| Identify Known Mutations from Mappings | ||
| Illumina High-Throughput Sequencing Import | X | |
| Import Primer Pairs | ||
| Import SAM/BAM Mapping Files | X | |
| Import Tracks from File | ||
| InDels and Structural Variants | ||
| Ion Torrent High-Throughput Sequencing Import | X | |
| Learn Peak Shape Filter | ||
| Link Variants to 3D Protein Structure | X | |
| Merge Annotation Tracks | X | |
| Merge Overlapping Pairs | ||
| Merge Read Mappings | X | |
| Merge Variant Tracks | ||
| Motif Search | ||
| PacBio High-Throughput Sequencing Import | X | |
| Pfam Domain Search | X | |
| Predict Splice Site Effect | ||
| Principal Component Analysis | ||
| Probabilistic Variant Detection | ||
| Proportion-based Statistical Analysis | ||
| Quality-based Variant Detection | ||
| Quantify miRNA | ||
| QC for Read Mapping | ||
| QC for Sequencing Reads | X | |
| QC for Targeted Sequencing | ||
| Remove Duplicate Mapped Reads | ||
| Remove Homozygous Reference Variants | ||
| Remove Information from Variants | X | |
| Remove Marginal Variants | X | |
| Remove Variants Present in Control Reads | X | |
| Rename Sequences in Lists | ||
| Reverse Complement Sequence | ||
| Subsample Sequence List | ||
| Sanger High-Throughput Sequencing Import | X | |
| Secondary Peak Calling | ||
| Score Regions | ||
| Split Sequence List | ||
| Transcription Factor ChIP-Seq | ||
| Translate to Protein | ||
| Trim Sequences | ||
| TRIO analysis | ||
| Update Sequence Attributes in Lists | ||
| Whole Genome Coverage Analysis |