PAM30 log-odds matrix
| A | C | D | E | F | G | H | I | K | L | M | N | P | Q | R | S | T | V | W | Y | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A | 6 | -6 | -3 | -2 | -8 | -2 | -7 | -5 | -7 | -6 | -5 | -4 | -2 | -4 | -7 | 0 | -1 | -2 | -13 | -8 |
| C | -6 | 10 | -14 | -14 | -13 | -9 | -7 | -6 | -14 | -15 | -13 | -11 | -8 | -14 | -8 | -3 | -8 | -6 | -15 | -4 |
| D | -3 | -14 | 8 | 2 | -15 | -3 | -4 | -7 | -4 | -12 | -11 | 2 | -8 | -2 | -10 | -4 | -5 | -8 | -15 | -11 |
| E | -2 | -14 | 2 | 8 | -14 | -4 | -5 | -5 | -4 | -9 | -7 | -2 | -5 | 1 | -9 | -4 | -6 | -6 | -17 | -8 |
| F | -8 | -13 | -15 | -14 | 9 | -9 | -6 | -2 | -14 | -3 | -4 | -9 | -10 | -13 | -9 | -6 | -9 | -8 | -4 | 2 |
| G | -2 | -9 | -3 | -4 | -9 | 6 | -9 | -11 | -7 | -10 | -8 | -3 | -6 | -7 | -9 | -2 | -6 | -5 | -15 | -14 |
| H | -7 | -7 | -4 | -5 | -6 | -9 | 9 | -9 | -6 | -6 | -10 | 0 | -4 | 1 | -2 | -6 | -7 | -6 | -7 | -3 |
| I | -5 | -6 | -7 | -5 | -2 | -11 | -9 | 8 | -6 | -1 | -1 | -5 | -8 | -8 | -5 | -7 | -2 | 2 | -14 | -6 |
| K | -7 | -14 | -4 | -4 | -14 | -7 | -6 | -6 | 7 | -8 | -2 | -1 | -6 | -3 | 0 | -4 | -3 | -9 | -12 | -9 |
| L | -6 | -15 | -12 | -9 | -3 | -10 | -6 | -1 | -8 | 7 | 1 | -7 | -7 | -5 | -8 | -8 | -7 | -2 | -6 | -7 |
| M | -5 | -13 | -11 | -7 | -4 | -8 | -10 | -1 | -2 | 1 | 11 | -9 | -8 | -4 | -4 | -5 | -4 | -1 | -13 | -11 |
| N | -4 | -11 | 2 | -2 | -9 | -3 | 0 | -5 | -1 | -7 | -9 | 8 | -6 | -3 | -6 | 0 | -2 | -8 | -8 | -4 |
| P | -2 | -8 | -8 | -5 | -10 | -6 | -4 | -8 | -6 | -7 | -8 | -6 | 8 | -3 | -4 | -2 | -4 | -6 | -14 | -13 |
| Q | -4 | -14 | -2 | 1 | -13 | -7 | 1 | -8 | -3 | -5 | -4 | -3 | -3 | 8 | -2 | -5 | -5 | -7 | -13 | -12 |
| R | -7 | -8 | -10 | -9 | -9 | -9 | -2 | -5 | 0 | -8 | -4 | -6 | -4 | -2 | 8 | -3 | -6 | -8 | -2 | -10 |
| S | 0 | -3 | -4 | -4 | -6 | -2 | -6 | -7 | -4 | -8 | -5 | 0 | -2 | -5 | -3 | 6 | 0 | -6 | -5 | -7 |
| T | -1 | -8 | -5 | -6 | -9 | -6 | -7 | -2 | -3 | -7 | -4 | -2 | -4 | -5 | -6 | 0 | 7 | -3 | -13 | -6 |
| V | -2 | -6 | -8 | -6 | -8 | -5 | -6 | 2 | -9 | -2 | -1 | -8 | -6 | -7 | -8 | -6 | -3 | 7 | -15 | -7 |
| W | -13 | -15 | -15 | -17 | -4 | -15 | -7 | -14 | -12 | -6 | -13 | -8 | -14 | -13 | -2 | -5 | -13 | -15 | 13 | -5 |
| Y | -8 | -4 | -11 | -8 | 2 | -14 | -3 | -6 | -9 | -7 | -11 | -4 | -13 | -12 | -10 | -7 | -6 | -7 | -5 | 10 |