Extracting sequences
If you wish to extract unaligned concatenated sequences for other analyzes or if you wish to inspect the sequence graphically, you can easily extract the sequences of one or more sequence types to a sequence list:Select the sequence types you wish to extract | right-click | Extract Sequences | Sequence Types or Alleles (see below)
The two options in the right-click menu provide two ways of composing the list (equivalent to Extracting alignments):
- Sequence Types (possibly redundant). A sequence list is made with alleles from all the selected sequence types, even if the same allele occurs more than once.
- Alleles (non-redundant). Redundant alleles are excluded from the list where possible. If you e.g. select three rows in the table and two of the sequence types have the same allele sequence in all the selected loci, the list will only include two sequences (the first option would have included all three sequences in the list).
Selecting either option will display a dialog similar to the one shown in figure 3.8 displaying the loci in the scheme.
The sequences in the sequence list will be created by joining the sequence for each locus that you select in this dialog.
Click OK to create the sequence list.