Align to nearest allele
If you have found a new allele, you can compare this with the allele in the scheme which has the highest degree of homology:
select the relevant row in the table | Align to
Nearest Allele (
)
Multilocus Sequence Typing Module then searches through all the alleles in the scheme and compares them to the new allele. Then an alignment is created with the nearest allele to make it easy to inspect conservation.