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• Introduction
  • What is MLST?
  • The concept of the QIAGEN CLC MLST Module
  • System requirements
  • Contact information
  • Installing modules
    • Licensing modules
    • Uninstalling modules
  • Acknowledgements
• MLST quick-start
• Handling MLST schemes
  • Downloading schemes
    • Download custom schemes
  • Creating new schemes
  • Merging schemes
  • Viewing schemes
    • Profile table
    • Allele table
• Isolates
  • Assemble and create isolate
  • Working with isolates
    • Isolate-scheme dependencies and the sequence type
    • Opening contigs
    • Deleting contigs
    • Assigning new contigs
    • Align to nearest allele
    • Assemble to an existing isolate
  • View a report of an isolate
• Extending schemes
  • Add isolates to scheme
  • Add sequences to scheme
• Bibliography

Acknowledgements

The CLC MLST Module provides tools to download MLST schemes from PubMLST (https://pubmlst.org)

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