Sequence alignment
CLC Drug Discovery Workbench can align nucleotides and proteins using a
progressive alignment algorithm (see
Bioinformatics explained:
Multiple alignments or read the White paper
on alignments in the Science section of
http://www.clcbio.com).
This chapter describes how to use the program to align sequences.
The chapter also describes alignment algorithms in more general
terms.
Subsections
- Create an alignment
- View alignments
- Bioinformatics explained: Sequence logo
- Edit alignments
- Pairwise comparison
- Bioinformatics explained: Multiple alignments
- Phylogenetic tree features
- Create Trees
- Tree Settings
- Metadata and phylogenetic trees