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• Introduction
  • Prerequisites
• Configuring cloud-based data locations
  • Configuring AWS credentials
  • Configuring Illumina BaseSpace credentials
• Configuring the cloud connection
• Importing data from the cloud
• Exporting data to the cloud
• Running workflows in the cloud
• Cloud Job Search
  • Downloading all results
  • Selective download of results
• Using the Cloud Server Plugin with the CLC Genomics Server
  • Configuring the Cloud Server Plugin
    • Configuring the AWS and CLC Genomics Cloud Engine settings
  • Configuring cloud presets
• External applications in the cloud
• Troubleshooting
• Installing and uninstalling Workbench plugins
  • Installation of Workbench plugins
  • Uninstalling Workbench plugins

Introduction

The Cloud Plugin provides functionality to:

• Import high-throughput sequencing data from Amazon Simple Storage Service (Amazon S3) and Illumina Basespace to be used in analyses in the CLC Workbench.
• Export data from the CLC Workbench to Amazon S3.
• Run workflows in the cloud using the CLC Genomics Cloud Engine (GCE).
• Find jobs and download results from jobs run in the cloud using GCE.

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Subsections

• Prerequisites

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