--alignment-stringency |
|
<[LOW, MEDIUM,HIGH]> |
A higher stringency level will tend to produce contigs with less ambiguities but will also tend to omit more sequencing reads and to generate more and shorter contigs (default: MEDIUM) |
--conflicts <[VOTE, UNKNOWN, AMBIGUTY]> |
conflicts (default: VOTE) |
--consensus <Boolean> |
Automatically produce consensus sequences without trace data (default: false) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--full-contigs <Boolean> |
Open full editable view of both contigs and trace data (default: true) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--min-length |
|
Integer: 1 <= x <= 2147483647 |
Exclude reads if less than this number of nucleotides can be aligned to the contig (default: 50) |
