External applications integration: Velvet

For demonstration of external applications integration, we are going to use Velvet as an example. Velvet [Zerbino and Birney, 2008] is a popular de novo assembler for next-generation sequencing data. We have provided example scripts and configurations to set this up as an external application on CLC Science Server.

The velvet package includes two programs that need to be run consecutively. Because the external application on the CLC Science Server is designed to call one program, a script is needed to encapsulate this.



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