--annotation-types <String> |
Only output sequences with these annotation types, leave empty to include all annotation types |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--flanking-after |
|
Integer: >= 0 |
How many extra symbols to include after the subsequence (default: 0) |
--flanking-before |
|
Integer: >= 0 |
How many extra symbols to include before the subsequence (default: 0) |
-i, --input <ClcObjectUrl> |
Input data on server |
--include-chromosome <Boolean> |
Include the chromosome of the origin annotation in the name of the extracted subsequences (Ignored when not processing tracks) (default: false) |
--include-name <Boolean> |
Include the name of the origin annotation in the name of the extracted subsequences (default: true) |
--include-origin <Boolean> |
Include the name of the input sequence/track in the name of the extracted subsequences (default: false) |
--include-region <Boolean> |
Include the region of the origin annotation in the name of the extracted subsequences (default: false) |
--include-type <Boolean> |
Include the type of the origin annotation in the name of the extracted subsequences (default: false) |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--search <String> |
Only output sequences with annotations that contains ALL of these words (e.g. BRCA1, by-1000genomes) (default: ) |
--sequence <ClcObjectUrl> |
Select reference sequence matching the tracks (Required when processing tracks) |
