• Product manuals

Browse the manual

• Introduction
  • The concept of Long Read Support
  • Contact information
  • System requirements
• Template workflows
  • De Novo Assemble Long Reads and Polish with Short Reads
• Import Nanopore Reads
• De Novo Assemble Long Reads
  • De novo assembly parameters
  • De novo assembly output
• Map Long Reads to Reference
  • Map Long Reads to Reference output
• Polish with Reads
  • Polish with Reads output
• Correct Long Reads
  • Correct Long Reads output
• RNA-Seq Analysis for Long Reads
  • Reads and reference settings
  • Mapping settings
  • Expression settings
  • RNA-Seq Analysis for Long Reads output
• Structural Variant Caller for Long Reads
  • Structural Variant Caller settings
  • Structural Variant Caller output
  • Structural Variant Caller algorithm
• Install and uninstall plugins
  • Installation of plugins
  • Uninstalling plugins
• Bibliography

Import Nanopore Reads

It is possible to import Oxford Nanopore reads using the Oxford Nanopore NGS importer or by downloading them using the Search for Reads in SRA functionality of the Workbench.

To use the importer:

        Import | Oxford Nanopore... ()

Specify the files to import in the import wizard (figure 3.1).

Figure 3.1: Importing Oxford Nanopore reads

• Discard read names Discard read names of the reads to import in order to save storage space.
• Discard quality scores Discard the quality scores of the reads to import in order to save storage space.

PacBio long reads can be imported with the CLC Genomics WorkbenchPacBio Long Reads importer, see http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=PacBio_Long_Reads.html.

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