• Product manuals

Browse the manual

• Introduction
  • The concept of CLC Haplotype Calling
  • Contact information
  • System requirements and installation
    • System requirements
    • Installation of plugins
    • Uninstalling plugins
  • Reference data management
    • The Reference Data Manager
• Data import
  • Import
    • VCF
    • Standard CLC Variant Track
• Data export
  • Export Genotype Track as VCF
  • Export Allele Table as CSV
  • Export Marker Genotypes as CSV or TSV
• Genotype Track
  • Genome Model
  • Locus Table
  • Allele Table
  • Header View
  • Track View
• Microhaplotype Caller
  • Microhaplotype Caller - Method
  • Microhaplotype Caller - Options
  • Microhaplotype Caller - Filters
    • General filters
    • Detection filters
    • Noise filters
  • Microhaplotype Caller - Annotations
• Glossary
  • Glossary
• Human Identity workflows
  • Detect QIAseq Human Indentity SNPs and Microhaplotypes
• Bibliography

Reference data management

Workflows need to be configured with the relevant reference data.

You can download reference data using the Reference Data Manager before running a workflow. For workflows configured to use particular Reference Data Sets, as the template workflows are, the download of such reference data can also be launched via the workflow wizard.

The following section covers aspects of the Reference Data Manager relevant when using the template workflows delivered with the CLC Haplotype Calling plugin. For the full documentation relating to this tool, please see the References management chapter of the CLC Genomics Workbench manual at https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=References_management.html.

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Subsections

• The Reference Data Manager

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