• Product manuals

Browse the manual

• Introduction
  • The concept of CLC Haplotype Calling
  • Contact information
  • System requirements and installation
    • System requirements
    • Installation of plugins
    • Uninstalling plugins
  • Reference data management
    • The Reference Data Manager
• Data import
  • Import
    • VCF
    • Standard CLC Variant Track
• Data export
  • Export Genotype Track as VCF
  • Export Allele Table as CSV
  • Export Marker Genotypes as CSV or TSV
• Genotype Track
  • Genome Model
  • Locus Table
  • Allele Table
  • Header View
  • Track View
• Microhaplotype Caller
  • Microhaplotype Caller - Method
  • Microhaplotype Caller - Options
  • Microhaplotype Caller - Filters
    • General filters
    • Detection filters
    • Noise filters
  • Microhaplotype Caller - Annotations
• Glossary
  • Glossary
• Human Identity workflows
  • Detect QIAseq Human Indentity SNPs and Microhaplotypes
• Bibliography

The Reference Data Manager

The QIAGEN Sets Reference Data Library tab gives access to the reference data used with the CLC Haplotype Calling plugin template workflow. From the wizard you can download and configure the reference data. For the full documentation relating to QIAGEN Sets, please see the QIAGEN Sets chapter of the CLC Genomics Workbench manual at https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=QIAGEN_Sets.html

Haplotype Calling reference data in Reference Data Manager

Reference data for QIAseq Human Identity panels is available for download in the element QIAseq Human Identity Panels hg19.

Figure 1.3: Reference data for QIAseq Human Identity Panels in the Reference Data Manager.

---