• Product manuals

Browse the manual

• Introduction
  • The concept of CLC Haplotype Calling
  • Contact information
  • System requirements and installation
    • System requirements
    • Installation of plugins
    • Uninstalling plugins
  • Reference data management
    • The Reference Data Manager
• Data import
  • Import
    • VCF
    • Standard CLC Variant Track
• Data export
  • Export Genotype Track as VCF
  • Export Allele Table as CSV
  • Export Marker Genotypes as CSV or TSV
• Genotype Track
  • Genome Model
  • Locus Table
  • Allele Table
  • Header View
  • Track View
• Microhaplotype Caller
  • Microhaplotype Caller - Method
  • Microhaplotype Caller - Options
  • Microhaplotype Caller - Filters
    • General filters
    • Detection filters
    • Noise filters
  • Microhaplotype Caller - Annotations
• Glossary
  • Glossary
• Human Identity workflows
  • Detect QIAseq Human Indentity SNPs and Microhaplotypes
• Bibliography

Microhaplotype Caller

The Microhaplotype Caller identifies sample alleles at variant loci as well as specified marker loci, uses phasing information available in the mapped reads to infer haplotypes, and produces a Genotype track with all detected alleles, including, for inspection, those not called due to applied filters.

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Subsections

• Microhaplotype Caller - Method
• Microhaplotype Caller - Options
• Microhaplotype Caller - Filters
• Microhaplotype Caller - Annotations

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