• Product manuals

Browse the manual

• Introduction
  • The concept of CLC Haplotype Calling
  • Contact information
  • System requirements and installation
    • System requirements
    • Installation of plugins
    • Uninstalling plugins
  • Reference data management
    • The Reference Data Manager
• Data import
  • Import
    • VCF
    • Standard CLC Variant Track
• Data export
  • Export Genotype Track as VCF
  • Export Allele Table as CSV
  • Export Marker Genotypes as CSV or TSV
• Genotype Track
  • Genome Model
  • Locus Table
  • Allele Table
  • Header View
  • Track View
• Microhaplotype Caller
  • Microhaplotype Caller - Method
  • Microhaplotype Caller - Options
  • Microhaplotype Caller - Filters
    • General filters
    • Detection filters
    • Noise filters
  • Microhaplotype Caller - Annotations
• Glossary
  • Glossary
• Human Identity workflows
  • Detect QIAseq Human Indentity SNPs and Microhaplotypes
• Bibliography

Export Marker Genotypes as CSV or TSV

It is possible to export genotypes present in a Genotype track for a specified set of markers, to a flexible CSV or TSV format that enables import in various external applications, e.g. for ancestry, phenotype, and kinship analysis.

Launch the standard export functionality by clicking on the Export button on the toolbar, or selecting the menu option: File | Export (). Select TSV or CSV as export format and select the tool Marker genotypes (beta).

Once the tool wizard has opened, choose one or more Genotype tracks and press Next. In the following steps it is possible to specify which markers should be exported and you can choose format details for the exported file. Clicking Finish will start the export of the marker genotypes.

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