It is possible to export genotypes present in a Genotype track for a specified set of markers, to a flexible CSV or TSV format that enables import in various external applications, e.g. for ancestry, phenotype, and kinship analysis.
Launch the standard export functionality by clicking on the Export button on the toolbar, or selecting the menu option: File | Export (). Select TSV or CSV as export format and select the tool Marker genotypes (beta).
Once the tool wizard has opened, choose one or more Genotype tracks and press Next. In the following steps it is possible to specify which markers should be exported and you can choose format details for the exported file. Clicking Finish will start the export of the marker genotypes.