Six types of output are generated:
- A 1 Reads Track
- A 1 Coverage Report Read Mapping
- A 1 Per-region Statistics Track
- A Filtered Variant Track Annotated variants
- An Amino Acid Track Shows the consequences of the variants at the amino acid level in the context of the original amino acid sequence. A variant introducing a stop mutation is illustrated with a red amino acid.
- A Genome Browser View