Output from the Prepare Raw Data workflow

Prepare Raw Data performs quality control and trimming of the sequencing reads and generates the following outputs(figure 14.6).

Image prepare_raw_data_layout
Figure 14.6: Check the settings and save your results.

  1. QC graphic report. The report should be checked by the user.
  2. QC supplementary report. The report should be checked by the user.
  3. Trimming report. The report should be checked by the user.
  4. Trimmed sequences output. Use as input together with the "Trimmed sequences (broken pairs) output" in the next ready-to-use workflow.
  5. Trimmed sequences (broken pairs) output. We do not recommend to use as input in the next ready-to-use workflow.