--cds-translation <Boolean> |
Translate annotations only. All annotations of type CDS will be translated (default: false) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--extract-cds-translations <Boolean> |
Extract the translations provided by the CDS annotation rather than translating the nucleotide sequence. (default: false) |
--extract-orf-translations <Boolean> |
Extract the translations provided by the ORF annotation rather than translating the nucleotide sequence. (default: false) |
--genetic-code <Genetic code> |
Choose the genetic code used in translation (default: 1 Standard) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--orf-translation <Boolean> |
Translate annotations only. All annotations of type ORF will be translated (default: false) |
--readingframeminus1 <Boolean> |
|
position on the negative strand (default: false) |
Set beginning of reading frame at first nucleotide |
--readingframeminus2 <Boolean> |
|
position on the negative strand (default: false) |
Set beginning of reading frame at second nucleotide |
--readingframeminus3 <Boolean> |
|
position on the negative strand (default: false) |
Set beginning of reading frame at third nucleotide |
--readingframeplus1 <Boolean> |
Set beginning of reading frame at first nucleotide position (default: true) |
--readingframeplus2 <Boolean> |
Set beginning of reading frame at second nucleotide position (default: false) |
--readingframeplus3 <Boolean> |
Set beginning of reading frame at third nucleotide position (default: false) |
