Introduction
The CLC Server is the central part of the CLC product line enterprise solutions. You can get an overview of the server solution in figure 1.1.
Here it is exemplified with the CLC Genomics Server.
Figure 1.1: An overview of the server solution from CLC bio. Note that not all features are included with all license models.
The CLC Science Server is shipped with a range of different tools and analyses. All CLC Workbenches can serve as client to CLC Science Server, but only analyses available both on the Workbench client and on CLC Science Server can be started from the Workbench client. For documentation on the customization and integration, please see the developer kit for the server at http://www.clcdeveloper.com.
The CLC Science Server is shipped with the following tools that can all be started from CLC Main Workbenchand CLC Server Command Line Tools:
- Alignments and Trees
- Create Alignment
- Create Tree
- Maximum Likelihood Phylogeny
- General Sequence Analysis
- Extract Annotations
- Extract Sequences
- Protein Analysis
- Signal Peptide Prediction
- Nucleotide Analysis
- Translate to Protein
- Convert DNA to RNA
- Convert RNA to DNA
- Reverse Complement Sequence
- Reverse Sequence
- Find Open Reading Frames
- Sequencing Data Analysis
- Trim Sequences
- Assemble Sequences
- Assemble Sequences to Reference
- Secondary Peak Calling
- Primers and Probes
- Find Binding Sites and Create Fragments
- Cloning
- All three Gateway cloning tools
- BLAST
- BLAST
- BLAST at NCBI
- Download BLAST Databases
- Create BLAST Database
- Manage BLAST Databases
The functionality of the CLC Science Server can be extended by installation of Server plugins. The available plugins can be found at http://www.clcbio.com/server_plugins.
Subsections