--add-features <Boolean> |
Annotate sequences with all found read frames (default: true) |
--both-strands <Boolean> |
Search for ORF's on both strands (default: true) |
--create-table <Boolean> |
Create table containing all the found reading frames (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--genetic-code <Genetic code> |
Genetic code used for translating codons (default: 1 Standard) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--min-length |
|
Integer: 1 <= x <= 2147483647 |
Minimal number of amino acids in an open reading frame (default: 100) |
--open-ended-sequence <Boolean> |
Allows the ORF to start or end outside the sequence. If the sequence studied is a part of a larger sequence, it may be advantageous to allow the ORF to start or end outside the sequence. (default: false) |
--start-codon <String> |
Custom start codon (default: [AUG, CUG, UUG]) |
--start-codon-mode |
|
<[AUG, ANY, CODE,LIST]> |
Select possible start codons. AUG, Any, All start codons in genetic code. (default: ANY) |
--stop-codon-included <Boolean> |
The ORF annotation will also cover the stop codon. Translating the annotation will include a stop character (*) in the protein sequence. (default: true) |
