--create-binding-sites-table <Boolean> |
Create binding sites table (default: true) |
--create-bindingsites-annotations |
|
<Boolean> |
Binding sites annotations (default: true) |
--create-fragment-table <Boolean> |
Create fragment table (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--exact-match <Boolean> |
Exact match (default: false) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--max-fragment-length |
|
Integer: >= 1 |
Max. fragment length (default: 4000) |
--min-3-end-matches |
|
Integer: >= 0 |
Number of consecutive base pairs required in 3' end (default: 10) |
--min-fragment-length |
|
Integer: >= 0 |
Min. fragment length (default: 100) |
--min-matches |
|
Integer: >= 0 |
Minimum number of base pairs required for a match (default: 15) |
--primer-conc |
|
Double: >= 0.0 |
Concentration of primer or probe (default: 200.0) |
--primers <ClcUrl> |
Primer |
--salt-conc |
|
Double: >= 0.0 |
Concentration of monovalent cations in buffer (default: 100.0) |
