Download MLST Schemes
For the most common bacteria, a MLST scheme has already been defined and can be downloaded from the databases at PubMLST.org.
To download the available MLST schemes, go to:
Microbial Genomics Module (
) | Databases (
) | NGS-MLST | Download MLST Schemes (PubMLST) (
)
This will bring up a dialog as shown in figure 18.1.
Figure 18.1: Selecting all MLST schemes for download.
The list of is dynamically updated with the available MLST schemes. This means that it takes a short while before the dialog is shown (depending on your internet connection). You can select one or more schemes for download. Use the filter field to type the name of the schemes you are interested in.
We recommend to Save the schemes in the folder where you also saved the different databases you need to download for the CLC Microbial Genomics Module.
See Viewingschemes for information about the content of the downloaded scheme(s).