Add NGS MLST Report to Scheme
Once the MLST typing has been performed´, and in the rare cases that a new type has been identified, it is possible to use the generated Consensus NGS MLST Report as input for the Add NGS MLST Report to Scheme tool and hereby add new typing information to an existing MLST scheme.
Microbial Genomics Module (
) | Databases (
) | NGS-MLST | Add NGS MLST Report to Scheme (
)
Specify the report output file of the Identify MLST tool to be used (figure 18.5).
Figure 18.5: Input file is the Consensus NGS MLST Report.
Then select the scheme you would like to add the newly found MLST type to (figure 18.6).
Figure 18.6: Select the relevant MLST scheme for adding the reported MLST type.
Save the updated scheme in the folder where you have stored database and downloaded schemes.