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• Introduction
  • System requirements
  • Contact information
• Installing and uninstalling Workbench modules
  • Installation of modules
  • Licensing modules
  • Uninstalling modules
• Tools
  • LightSpeed Methods
    • Trimming
    • Readmapping
    • Deduplication
    • Local realigment
    • Germline variant detection
    • Limitations
  • LightSpeed Fastq to Germline Variants
    • LightSpeed Fastq to Germline Variants outputs
  • Report
• Template Workflows
  • Fastq to Annotated Germline Variants
    • Outputs from Fastq to Annotated Germline Variants
  • Fastq to Annotated Germline Variants with Coverage Analysis
    • Outputs from Fastq to Annotated Germline Variants with Coverage Analysis
  • Fastq to CNV Control
    • Outputs from Fastq to CNV Control
• Licensing requirements for the QIAGEN CLC LightSpeed Module
  • Licensing modules on a Workbench
    • Request an evaluation license
    • Download a license using a license order ID
    • Import a license from a file
    • Configure License Server connection
    • Download a static license on a non-networked computer
  • Licensing Server Extensions on a CLC Server
    • Download a static license on a non-networked machine

Tools

The CLC LightSpeed Module contains the tool LightSpeed Fastq to Germline Variants. This chapter contains the following sections describing different aspects of the tool:

• LightSpeed Methods A description of each of the steps performed by the LightSpeed Fastq to Germline Variants tool.
• LightSpeed Fastq to Germline Variants Where to find the tool and how to run it.
• Report A detailed description of the contents of the report produced by LightSpeed Fastq to Germline Variants.

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Subsections

• LightSpeed Methods
• LightSpeed Fastq to Germline Variants
• Report

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