Template Workflows
With the CLC LightSpeed Module the following template workflows are available:
- Fastq to Annotated Germline Variants identifies germline variants and annotates them with exon number and amino acid changes.
- Fastq to Annotated Germline Variants with Coverage Analysis identifies germline variants and annotates them with exon number and amino acid changes. A readmapping is saved, coverage metrics are calculated, and optionally, copy number variant detection is performed.
- Fastq to CNV Control generates control coverage tables for copy number variant detection.
Subsections
- Fastq to Annotated Germline Variants
- Fastq to Annotated Germline Variants with Coverage Analysis
- Fastq to CNV Control