Outputs from Fastq to CNV Control
The Fastq to CNV Control template workflow produces the following outputs:
- Coverage Table A table (
) providing coverage information per position in the target regions.
The coverage table can be used as control for copy number variant detection, either in the template workflow Fastq to Annotated Germline Variants with Coverage Analysis (Fastq to Annotated Germline Variants with Coverage Analysis), or directly in the tool Copy Number Variant Detection (CNVs) (http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Copy_Number_Variant_Detection.html).
- LightSpeed Report A report (
) summarizing details of each analysis step performed by the LightSpeed Fastq to Germline Variants tool.
- Coverage Report. A report () summarizing coverage.
- Target Region Statistics Track A track (
) providing coverage information per target region.
The Coverage Table, Coverage Report, and the Target Region Statistics Track are produced by QC for Targeted Sequencing (http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=QC_Targeted_Sequencing.html).