Predicted genes table
This table contains a row for each predicted gene. If the Use existing annotations option is selected, the existing gene annotations are also included in the table. When the 'Use annotations' option has been used the gene table has the following columns:- Reference
- The name of the mapping in which the gene was predicted.
- Gene
- The name of the gene if it was annotated prior to the analysis. If it is a new predicted gene the name will be 'Gene' followed by a number (e.g. 'Gene 1').
- Unknown
- No if the gene was annotated prior to the analysis; yes if it is a new predicted gene.
- Length
- The length of the gene region.
- Start
- The start of the gene region.
- End
- The end of the gene region.
- Strand
- The strand on which the gene was predicted.
- Transcript
- The number of transcripts for the gene (including prior annotated as well as new predicted).
- Known transcripts
- The number of prior annotated transcripts for the gene.
- Unknown transcripts
- The number of new predicted transcripts for the gene.
- Longest transcripts
- The length of the longest transcript for the gene.
- Unknown events
- The number of unknown events (that is, events that are not contained in prior annotated transcripts) for the transcripts of the gene.
- Unknown spliced events
- The number of unknown spliced events (that is, spliced events that are not contained in prior annotated transcripts) for the transcripts of the gene.
- Reads
- The sum of the read counts of the events from which the transcript annotations were built.
- Spliced reads
- The sum of the spliced read counts of the events from which the transcript annotations were built.
- New 5' sequence
- Yes, if the gene region extends 5' of the prior gene annotation if there was one, else no.
- New 3' sequence
- Yes, if the gene region extends 3' of the prior gene annotation if there was one, else no.
- Splicing description
- A summary of the types of new splice sites found for transcripts for the gene ('Alternative acceptor/donor' and/or 'new exon'.