UMAP and tSNE plot functionality
The UMAP for Single Cell and tSNE for Single Cell tools (see Dimensionality reduction) produce dimensionality reduction plots from which- different aspects of the data can be visualized;
- cells can be manually annotated;
- various tools can be started using the information selected in the plot.
This chapter describes this functionality, showcasing specific aspects using a UMAP plot of the '10k Heart Cells from an E18 mouse (v3 chemistry)' dataset from 10x Genomics (https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/heart_10k_v3).
Subsections
- Manual Annotation
- Create Subset
- Extract to Table
- Launching of Create Expression Plot
- Launching of Differential Expression for Single Cell