Output from Perform Single Cell Analysis from Expression Matrix
The workflow creates several output elements stored in a specific folder structure as indicated in figure 10.1. The reports are valuable for assessing whether the appropriate parameters have been used.
Figure 10.1: The Results folder contains the output elements produced by the Perform Single Cell Analysis from Expression Matrix workflow when run using the matrices in the Input folder. The Reports folder contains a subfolder for each of the batch units defined during execution. Here, the "Use organization of input data" was used. Note that matrix S2_3 contained two samples and so two QC reports are produced. Root elements originate from the combined analysis of all inputs.