Biomedical Genomics Server Extension
The Biomedical Genomics Server Extension can run all the tools and analyses available from both Biomedical Genomics Workbench and CLC Genomics Workbench as well as the pre-installed workflows from Biomedical Genomics Workbench.
All the tools listed in CLC Genomics Server can therefore be started on the server, as well as the Biomedical Genomics Workbench specific tools:
- Add Information about Amino Acid
- Add Conservation Scores
- Add Flanking Sequence
- Add Fold Changes
- Add Information from Variant Databases
- Add Information from Overlapping Genes
- Add Information from Overlapping Variants
- Compare Shared Variants within a Group of Samples
- Create fold change track from expressions
- Create New Genome Browser View
- Duplicate Mapped Reads Removal
- Add Exon Number
- Identify Differentially Expressed Gene Groups and Pathways
- Identify Candidate Variants
- identify Enriched Variants in Case vs Control Group
- Identify Highly Mutated Gene Groups and Pathways
- Identify Mutated Genes
- Identify Variants with Effect on Splicing
- Mutation Tester Tool
- Primer Pair Import
- Primer Trim
- QC for Read Mapping
- QC for Sequencing Reads
- QC for Target Sequencing
- Realign Variants before Comparison
- Remove False Positives
- Remove Germline Variants
- Remove Information from Variants
- Remove Variants Inside Genome Regions
- Remove Variants Outside Genome Regions
- Remove Variants Outside Targeted Regions
- Remove Reference Variants
- Remove Variants Found in External Database
- Remove Variants Not Found in External Database
- Select Genes by Name
- Whole Genome Coverage Analysis
The functionality of the CLC Server can be extended by installation of Server plugins. The available plugins can be found at http://www.clcbio.com/server_plugins.