Create Trees
For a given set of aligned sequences (see Create an alignment) it is possible to infer their evolutionary relationships. In CLC Drug Discovery Workbench this may be done using a distance based method to generate a phylogenetic tree:
- Create Tree (
) Is a tool that uses distance estimates computed from multiple alignments to create trees. The user can select whether to use Jukes-Cantor distance correction or Kimura distance correction (Kimura 80 for nucleotides/Kimura protein for proteins) in combination with either the neighbor joining or UPGMA method (see Distance-based methods).
Subsections