Template workflows
Template workflows are provided as example workflows (figure 12.59). They can be launched as they are from the Toolbox, or copies can be easily opened, allowing you to optimize the workflow to fit your specific application.
Figure 12.59: The Template Workflows section of the Toolbox
To open a template workflow to view the design or edit it, you can:
- Right-click on the workflow name in the Toolbox in the lower, left side of the Workbench under:
Toolbox | Template Workflows
and select the option Open Copy of Workflow from the right-click menu.
or
- Open the Workflow Manager by clicking on the Workflows button (
) in the top toolbar, and choose Manage Workflows.
Click on the Template Workflows tab and then select the workflow you wish to edit. Then click on the Open Copy of Workflow button.
See Workflow elements for information on configuring workflow elements.
In the following sections, we describe the template workflows distributed with the CLC Genomics Workbench.Template workflows distributed with plugins are described in the relevant plugin manual.
Subsections
- Import with Metadata
- Prepare Raw Data
- Identify DNA Germline Variants workflow
- RNA-Seq and Differential Gene Expression Analysis workflow