Create an alignment

Alignments can be created from sequences, sequence lists, existing alignments and from any combination of the three.

To create an alignment, go to:

        Toolbox | Alignments and Trees (Image alignmentsandtrees)| Create Alignment (Image alignment)

This opens the dialog shown in figure 14.1.

Image createalignmentdialog
Figure 14.1: Creating an alignment.

After selecting the elements to align, you are presented with options that can be configured (figure 14.2).

Image createalignmentnext
Figure 14.2: Adjusting alignment algorithm parameters.



Subsections