Running the target regions statistics
To create the target regions statistics:
Toolbox | Resequencing (
) | Create Statistics for Target Regions (
)
This opens a dialog where you select mapping results mapping results (
)/ (
)/ (
) and click Next. This opens the dialog shown in figure 26.1.
Figure 26.1: Specifying the annotation type for the targeted regions.
Click the Browse (
) icon to select an annotation track that defines the targeted regions of your reference genome. You can either import the target regions as an annotation file or convert from annotations on a reference genome that is already stored in the Navigation Area.
The Report type allows you to select different sets of predefined coverage thresholds to use for reporting (see below). Furthermore, you will be asked to provide a Minimum coverage threshold. This will be used to provide the length of each target region that has at least this coverage.
Click Finish to create the reports.