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• Introduction to the CLC Genomics Cloud
  • Overview of CLC Genomics Cloud
  • CLC Genomics Cloud requirements
  • Contact information
  • Installing the CLC Cloud Module
    • Licensing modules
    • Uninstalling modules
  • Installing the Cloud Server Plugin
• Setting up CLC Genomics Cloud resources on AWS
  • Setting up AWS resources
  • Adding more AWS Batch queues for CLC jobs
  • Adding more AWS IAM users
  • Deleting or redeploying CLC Genomics Cloud infrastructure on AWS
• Using a CLC Workbench to work on the cloud
  • Prerequisites for working on the cloud using a Workbench
  • Configuring an AWS Connection in the Workbench
  • Submitting analyses to AWS from a Workbench
  • Working with AWS S3 using the Remote Files tab
  • Accessing results from the Processes tab
• Using a CLC Server to work on the cloud
  • Benefits of submitting jobs via a CLC Server
  • AWS Connections in the CLC Server
  • Configuring cloud presets
  • Browse AWS S3 locations
  • Submitting workflows using the CLC Server Command Line Tools
• Integrating third party tools into CLC software
• General information about inputs and results
  • General information about input data for cloud analyses
    • Reference data for analyses on the cloud
    • Using locally held data for analyses on AWS S3
  • General information about outputs from cloud analyses
• Monitoring and reviewing CLC cloud jobs
  • Using a CLC Workbench to monitor and review cloud jobs
  • Using a CLC Server to monitor and review cloud jobs
  • Using the AWS Console to monitor and review cloud jobs
• Appendix
  • Standard AWS Batch queues for CLC Genomics Cloud
  • AWS Batch queues, compute environments and AMIs
  • System file retention policies
  • Making custom plugins available for cloud analyses

Introduction to the CLC Genomics Cloud

This manual describes the CLC Genomics Cloud solution, including establishing the necessary infrastructure on AWS, installation and use of QIAGEN CLC Cloud Module 23.0.1 and Cloud Server Plugin 23.0.1, and information about submitting CLC jobs to the cloud for execution.

CLC Genomics Cloud setups require CLC software version 23 or above.

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Subsections

• Overview of CLC Genomics Cloud
• CLC Genomics Cloud requirements
• Contact information
• Installing the CLC Cloud Module
• Installing the Cloud Server Plugin

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