• Manuals

Browse the manual

• Introduction to the Advanced RNA-Seq plugin
  • Input data and normalization
    • Normalization
    • Metadata
  • PCA for RNA-Seq
    • Principal component analysis plot (2D)
    • Principal component analysis plot (3D)
  • Differential Expression for RNA-Seq
    • The statistical model
    • Output of the Differential Expression for RNA-Seqtool
    • Statistical comparison tracks
    • The volcano plot
  • Create Heat Map for RNA-Seq
    • Clustering of features and samples
    • The heat map view
  • Create Expression Browser
    • The expression browser
  • Create Venn Diagram for RNA-Seq
    • Venn diagram table view
• Installation of the Advanced RNA-Seq plugin
• Uninstall
• Bibliography

Venn diagram table view

It is possible to inspect the p-values and fold changes for each gene or transcript individually in the Venn diagram table view (see figure 1.17).

Figure 1.17: The Venn diagram table view.

Clicking a circle segment in the Venn Diagram plot will select the genes or transcript in the table view. It is also possible to create a subset list of genes or transcripts using the Create from selection.

In the Side Panel to the right it is possible to adjust the Table settings. It is possible to adjust the column layout, and select which columns should be included in the table.

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