This plugin allows for use of three additional alignment methods, which are otherwise not distributed with the CLC Workbench. These methods will very briefly be mentioned here and we urge the users of this plugin to read the manuals for the individual alignment methods. These are generally easy to find by running an internet search.

The tools for the additional alignment methods provided with the Additional Alignments plugin can be found in the toolbox after installation of the plugin.

You will need CLC Genomic Workbench or CLC Main Workbench in version 5.0.0 or newer. Note that all 3 alignments programs are developed by third parties.