Finding differentially methylated regions

It is possible to run the Call Methylation Levels tool (see http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Call_Methylation_Levels.html) to detect regions of differential methylation after the Detect QIAseq Methylation workflow has been run.

For detecting Differentially Methylated Regions using QIAseq Targeted Methyl data, we advise using certain settings of the Call Methylation Levels tool: