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Introduction
- Genome finishing and working with shared data
System requirements and installation of the CLC Genome Finishing Module
- System requirements
- How to install a Workbench module
- Licensing modules
- How to uninstall a Workbench module
- How to install a Server module
Align Contigs
- How to run the Align Contigs tool
- How to use the Align Contigs tool
Analyze Contigs
- How to run the Analyze Contigs tool
- How to use the Analyze Contigs tool
  - The contig analysis table
  - How to edit data following contig analysis
Create Amplicons
- How to run the Create Amplicons tool
Create Primers
- How to use the Create Primers tool
Add Reads to Contigs
- How to run the Add reads to contigs
Find Sequence
- How to run the Find Sequence tool
  - The Find Sequence output
Collect Paired Read Statistics
- How to run the Collect Paired Read Statistics tool
- How to use the Collect Paired Read Statistics tool
Reassemble Regions
- How to run Reassemble Regions
Extend Contigs
- How to run Extend Contigs
Join Contigs
- How to run the Join Contigs tool
Remove Extension of Contigs
- How to run the Remove Extension of Contigs tool
Annotate from Reference
- How to run the Annotate from Reference tool
Import of PacBio reads
Correct PacBio Reads
- How to run the Correct PacBio Reads tool
- Error-correction report
De Novo Assemble PacBio Reads
- How to run the De Novo Assemble PacBio Reads tool
- De Novo Assemble PacBio Reads report
Workflows
- PacBio De Novo Assembly Pipeline
Licensing requirements for the CLC Genome Finishing Module
- Licensing modules on a Workbench
- Licensing Server Extensions on a CLC Server
  - Download a static license on a non-networked machine
Bibliography

Licensing requirements for the CLC Genome Finishing Module

To use tools delivered by the CLC Genome Finishing Module or CLC Genome Finishing Server Extension, you will need a license. This chapter describes how to install and configure such licenses on a CLC Workbench or CLC Server. CLC Genome Finishing Module can be installed in Viewing Mode on a CLC Workbench to access data created using the module's tools without requiring a license.

Subsections