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Introduction
- Genome finishing and working with shared data
System requirements and installation of the CLC Genome Finishing Module
- System requirements
- How to install a Workbench plugin
- Plugins licenses
- How to uninstall a Workbench plugin
- How to install a Server module
Align Contigs
- How to run the Align Contigs tool
- How to use the Align Contigs tool
Analyze Contigs
- How to run the Analyze Contigs tool
- How to use the Analyze Contigs tool
  - The contig analysis table
  - How to edit data following contig analysis
Create Amplicons
- How to run the Create Amplicons tool
Create Primers
- How to use the Create Primers tool
Add Reads to Contigs
- How to run the Add reads to contigs
Find Sequence
- How to run the Find Sequence tool
  - The Find Sequence output
Collect Paired Read Statistics
- How to run the Collect Paired Read Statistics tool
- How to use the Collect Paired Read Statistics tool
Reassemble Regions
- How to run Reassemble Regions
Extend Contigs
- How to run Extend Contigs
Join Contigs
- How to run the Join Contigs tool
Remove Extension of Contigs
- How to run the Remove Extension of Contigs tool
Annotate from Reference
- How to run the Annotate from Reference tool
Import of PacBio reads
Correct PacBio Reads
- How to run the Correct PacBio Reads tool
- Error-correction report
De Novo Assemble PacBio Reads
- How to run the De Novo Assemble PacBio Reads tool
- De Novo Assemble PacBio Reads report
Workflows
- PacBio De Novo Assembly Pipeline
Licensing requirements for the CLC Genome Finishing Module
- Workbench licenses
- Server licenses
Bibliography

System requirements and installation of the CLC Genome Finishing Module

Subsections

System requirements
How to install a Workbench plugin
Plugins licenses
How to uninstall a Workbench plugin
How to install a Server module