Given an annotation track with the target regions (e.g. imported from a bed file), this tool will investigate a read mapping to determine whether the targeted regions have been appropriately covered by sequencing reads as well as information about how specific the reads map to the targeted regions. The results are provided both as a summary report and as track or table with detailed information about each targeted region.
- Running the "QC for Target Sequencing" tool
- Coverage summary report
- Per-region statistics
- Coverage table