Viewing and reporting tools overview
A basic viewing tool for assemblies is included with CLC Assembly Cell:
- clc_mapping_viewer
- Show a number of mappings in a text based viewer.
The following commands are available for reporting information about cas assembly files as well as contig data:
- clc_sequence_info
- Print overview of any sequence file.
- clc_mapping_info
- Print overview of a mapping.
- clc_mapping_table
- Print details of each read in a mapping.